Q: What is graphsim used for?

A: graphsim is used to simulate gene expression data from biological network structures, particularly for researchers studying systems biology and computational genetics. It leverages `igraph` for network modeling and `mvtnorm` for statistical simulations.

Q: Where can I download graphsim?

A: The latest versions of graphsim are available for download from its GitHub releases page: [https://github.com/TomKellyGenetics/graphsim/releases](https://github.com/TomKellyGenetics/graphsim/releases).

Q: Is graphsim open-source?

A: Yes, graphsim is free software distributed under open-source terms, allowing users to freely run, study, modify, and distribute it.

Q: What are the key dependencies of graphsim?

A: graphsim relies on the `igraph` package for network structure representation and the `mvtnorm` package for multivariate normal distribution simulations.

Q: Has graphsim been published in a peer-reviewed journal?

A: Yes, graphsim has been published in the Journal of Open Source Software (JOSS), ensuring its scientific credibility and accessibility.

graphsim

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

CreativeWork free_software Q120964676

Facts

4 properties

Instance of: free software
Described by source: graphsim: An R package for simulating gene expression data from graph structures of biological pathways^[8]
Software version identifier: 0.1.2, 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.4^[2]^[3]^[4]^[5]^[6]^[7]
Version: 0.1.2, 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.4

🏷️ Also known as

en graphsim

🔖 Identifiers · 2

Download URL: github.com
Source code repository URL: github.com

Report an error or request removal Lineage (PROV-JSON)

🔗 Connections

Instance of 1

free software

Press Enter · cited answer in seconds

Summary

graphsim is a free software^[1].

References

Programmatic citations — every numbered marker resolves to a verifiable graph row below.

Direct Wikidata claims

[2] ↑ graphsim — software version identifier (P348): 0.1.2. github.com. Retrieved 2023-07-28. github.com. Provenance: wikidata.org.
[3] ↑ graphsim — software version identifier (P348): 1.0.0. github.com. Retrieved 2023-07-28. github.com. Provenance: wikidata.org.
[4] ↑ graphsim — software version identifier (P348): 1.0.1. github.com. Retrieved 2023-07-28. github.com. Provenance: wikidata.org.
[5] ↑ graphsim — software version identifier (P348): 1.0.2. github.com. Retrieved 2023-07-28. github.com. Provenance: wikidata.org.
[6] ↑ graphsim — software version identifier (P348): 1.0.3. github.com. Retrieved 2023-07-28. github.com. Provenance: wikidata.org.
[7] ↑ graphsim — software version identifier (P348): 1.0.4. github.com. Retrieved 2025-05-25. github.com. Provenance: wikidata.org.
[8] ↑ graphsim — described by source (P1343): graphsim: An R package for simulating gene expression data from graph structures of biological pathways. wikidata.org.

Class ancestry

[1] ↑ graphsim is an instance of free software (Q341) [P31, primary]. Wikidata. wikidata.org.

📑 Cite this page

Use these citations when quoting this entity in research, articles, AI prompts, or wherever provenance matters. We aggregate Wikidata + Wikipedia + authoritative open-data sources; the stitched, scored, cross-referenced view is what 4ort.xyz contributes.

APA 4ort.xyz Knowledge Graph. (2026). graphsim. Retrieved May 3, 2026, from https://4ort.xyz/entity/graphsim

MLA “graphsim.” 4ort.xyz Knowledge Graph, 4ort.xyz, 3 May. 2026, https://4ort.xyz/entity/graphsim.

BibTeX

@misc{4ortxyz_graphsim_2026, author = {{4ort.xyz Knowledge Graph}}, title = {{graphsim}}, year = {2026}, url = {https://4ort.xyz/entity/graphsim}, note = {Accessed: 2026-05-03}}

LLM prompt

According to 4ort.xyz Knowledge Graph (aggregator of Wikidata, Wikipedia, and authoritative open-data sources): graphsim — https://4ort.xyz/entity/graphsim (retrieved 2026-05-03)

Canonical URL: https://4ort.xyz/entity/graphsim · Last refreshed: May 3, 2026