dGDP(3-)

chemical compound

ChemicalSubstance group_of_stereoisomers Q27125902

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dGDP(3-)

Summary

dGDP(3-) is a group of stereoisomers^[1].

Key Facts

dGDP(3-)'s instance of is recorded as group of stereoisomers^[2].
dGDP(3-)'s canonical SMILES is recorded as C1C(C(OC1N2C=NC3=C2NC(=NC3=O)N)COP(=O)([O-])OP(=O)([O-])[O-])O^[3].
dGDP(3-)'s chemical formula is recorded as C₁₀H₁₂N₅O₁₀P₂³⁻^[4].
dGDP(3-) is a type of organic anion^[5].
dGDP(3-) is part of T2-induced deoxynucleotide kinase activity^[6].
dGDP(3-) is part of (deoxy)nucleoside phosphate kinase activity, dGTP as phosphate donor^[7].
dGDP(3-) is part of dGDP biosynthetic process^[8].
dGDP(3-) is part of dGDP binding^[9].
dGDP(3-) is part of dGDP metabolic process^[10].
dGDP(3-) is part of dGDP catabolic process^[11].
dGDP(3-)'s isomeric SMILES is recorded as C1C@@HO^C@@HO">[12].
dGDP(3-)'s mass is recorded as {'unit': 'http://www.wikidata.org/entity/Q483261', 'amount': '+424.00758558372985'}^[13].
dGDP(3-)'s subject has role is recorded as primary metabolite^[14].

⭐ Popularity Graph

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Quick Facts

Instance of group of stereoisomers

Subclass of organic anion

Part of T2-induced deoxynucleotide kinase activity, (deoxy)nucleoside phosphate kinase activity, dGTP as phosphate donor, dGDP biosynthetic process, dGDP binding, dGDP metabolic process, dGDP catabolic process

Properties

Canonical smiles C1C(C(OC1N2C=NC3=C2NC(=NC3=O)N)COP(=O)([O-])OP(=O)([O-])[O-])O

Chemical formula C₁₀H₁₂N₅O₁₀P₂³⁻

Isomeric smiles C1[C@@H]([C@H](O[C@H]1N2C=NC3=C2NC(=NC3=O)N)COP(=O)([O-])OP(=O)([O-])[O-])O

Mass +424.00758558372985

Subject has role primary metabolite

External References (8)

Chebi id 58595

Chemspider id 26331262

Inchi InChI=1S/C10H15N5O10P2/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(24-6)2-23-27(21,22)25-26(18,19)20/h3-6,16H,1-2H2,(H,21,22)(H2,18,19,20)(H3,11,13,14,17)/p-3/t4-,5+,6+/m0/s1

Inchikey CIKGWCTVFSRMJU-KVQBGUIXSA-K

Kegg id C00361

Pubchem cid 25245673, 135398594

Reaxys registry number 11523263

Unii 4RQT5B7A8J

🏷️ Also known as

en 2'-deoxyguanosine 5'-diphosphate(3-) en dGDP(3-)

References

Programmatic citations — every numbered marker resolves to a verifiable graph row below.

Direct Wikidata claims

[2] ↑ dGDP(3-) — instance of (P31): group of stereoisomers. wikidata.org.
[3] ↑ dGDP(3-) — canonical SMILES (P233): C1C(C(OC1N2C=NC3=C2NC(=NC3=O)N)COP(=O)([O-])OP(=O)([O-])[O-])O. PubChem. Retrieved 2016-10-06. wikidata.org.
[4] ↑ dGDP(3-) — chemical formula (P274): C₁₀H₁₂N₅O₁₀P₂³⁻. wikidata.org.
[5] ↑ dGDP(3-) — subclass of (P279): organic anion. wikidata.org.
[6] ↑ dGDP(3-) — part of (P361): T2-induced deoxynucleotide kinase activity. geneontology.org. Retrieved 2021-02-01. geneontology.org. Provenance: wikidata.org.
[7] ↑ dGDP(3-) — part of (P361): (deoxy)nucleoside phosphate kinase activity, dGTP as phosphate donor. geneontology.org. Retrieved 2022-05-25. geneontology.org. Provenance: wikidata.org.
[8] ↑ dGDP(3-) — part of (P361): dGDP biosynthetic process. Gene Ontology release 2022-07-01. wikidata.org.
[9] ↑ dGDP(3-) — part of (P361): dGDP binding. Gene Ontology release 2022-07-01. wikidata.org.
[10] ↑ dGDP(3-) — part of (P361): dGDP metabolic process. Gene Ontology release 2022-07-01. wikidata.org.
[11] ↑ dGDP(3-) — part of (P361): dGDP catabolic process. Gene Ontology release 2022-07-01. wikidata.org.
[12] ↑ dGDP(3-) — isomeric SMILES (P2017): C1[C@@H]([C@H](O[C@H]1N2C=NC3=C2NC(=NC3=O)N)COP(=O)([O-])OP(=O)([O-])[O-])O. PubChem. Retrieved 2016-10-06. wikidata.org.
[13] ↑ dGDP(3-) — mass (P2067): {'unit': 'http://www.wikidata.org/entity/Q483261', 'amount': '+424.00758558372985'}. wikidata.org.
[14] ↑ dGDP(3-) — subject has role (P2868): primary metabolite. Reactome. reactome.org. Provenance: wikidata.org.

Class ancestry

[1] ↑ dGDP(3-) is an instance of group of stereoisomers (Q59199015) [P31, primary]. Wikidata. wikidata.org.

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APA 4ort.xyz Knowledge Graph. (2026). dGDP(3-). Retrieved May 3, 2026, from https://4ort.xyz/entity/dgdp-3-

MLA “dGDP(3-).” 4ort.xyz Knowledge Graph, 4ort.xyz, 3 May. 2026, https://4ort.xyz/entity/dgdp-3-.

BibTeX

@misc{4ortxyz_dgdp-3-_2026, author = {{4ort.xyz Knowledge Graph}}, title = {{dGDP(3-)}}, year = {2026}, url = {https://4ort.xyz/entity/dgdp-3-}, note = {Accessed: 2026-05-03}}

LLM prompt

According to 4ort.xyz Knowledge Graph (aggregator of Wikidata, Wikipedia, and authoritative open-data sources): dGDP(3-) — https://4ort.xyz/entity/dgdp-3- (retrieved 2026-05-03)

Canonical URL: https://4ort.xyz/entity/dgdp-3- · Last refreshed: May 3, 2026

Edit History

Rolling log of changes to this entity's Wikidata record. Values shown reflect the current state of each edited property — follow the history link to see the precise diff for any edit.

11w ago · Nabbegat · 2026-06-19 view diff on Wikidata ↗

Unii → 4RQT5B7A8J

Imported from → —

Kegg id → C00361

Instance of → group of stereoisomers

+ 14 other properties edited (see Wikidata diff for full list)

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