# Niema Moshiri > researcher **Wikidata**: [Q60148718](https://www.wikidata.org/wiki/Q60148718) **Source**: https://4ort.xyz/entity/niema-moshiri ## Summary Niema Moshiri is a male American researcher and computer scientist who works at the University of California, San Diego. He earned his doctorate under Siavash Mirarab and Pavel A. Pevzner and contributes to computational biology through peer‑reviewed publications, open‑source software, and active participation in scholarly networks. ## Biography - **Born:** *not provided* - **Nationality:** United States - **Education:** Ph.D., University of California, San Diego (doctoral advisors: Siavash Mirarab; Pavel A. Pevzner) - **Known for:** Computational biology research and software development - **Employer(s):** University of California, San Diego (faculty/research staff, start 1 July 2019) - **Field(s):** Computer science, bioinformatics, computational biology ## Contributions Niema Moshiri has produced a body of scholarly work indexed in major academic databases. His DBLP author identifier (228/7791) lists multiple peer‑reviewed articles in computational biology, reflecting collaborations with leading scientists such as his doctoral advisor Pavel A. Pevzner. He holds a ResearcherID (AAV‑8750‑2020) that aggregates his publications and citations. Beyond articles, Moshiri maintains an active open‑source presence on GitHub under the username **niemasd**, where he shares code and tools used by the bioinformatics community. His software contributions are cited in several research papers, facilitating reproducible analyses of genomic data. Moshiri’s academic lineage is recorded in the Mathematics Genealogy Project (ID 250712), linking him to a network of scholars in algorithmic biology. His professional profiles on LinkedIn (niemamoshiri) and Mastodon (niemasd@genomic.social) further disseminate his research outputs and foster collaborations. ## FAQs ### Q: What is Niema Moshiri’s primary research area? A: He focuses on computational biology and bioinformatics, developing algorithms and software for genomic data analysis. ### Q: Where does Niema Moshiri work? A: He is a researcher at the University of California, San Diego, a position he has held since July 1 2019. ### Q: How can I find his publications? A: His works are listed under DBLP author ID 228/7791 and ResearcherID AAV‑8750‑2020; many are also accessible via his ORCID‑linked profiles. ### Q: Does he contribute to open‑source projects? A: Yes, he publishes code on GitHub under the handle **niemasd**, which is used by the bioinformatics community. ### Q: Who supervised his doctoral research? A: His Ph.D. advisors were Siavash Mirarab and Pavel A. Pevzner, both prominent figures in computational genomics. ## Why They Matter Niema Moshiri bridges computer science and biology, creating tools that enable researchers to process large‑scale genomic datasets efficiently. By publishing reproducible software and methodological papers, he accelerates discovery in areas such as pathogen evolution and population genetics. His mentorship lineage—linking him to pioneers like Pavel Pevzner—helps propagate rigorous algorithmic thinking throughout the bioinformatics field. Without his contributions, many downstream analyses would lack the open, well‑documented codebases that underpin modern genomic research. ## Notable For - Faculty/research appointment at UC San Diego since July 2019. - Doctoral training under Siavash Mirarab and Pavel A. Pevzner. - DBLP author ID 228/7791, indexing multiple computational biology papers. - Open‑source software contributions on GitHub (username **niemasd**). - Inclusion in the Mathematics Genealogy Project (ID 250712), reflecting his academic heritage. ## Body ### Education and Training - **Ph.D., University of California, San Diego** – Completed under the joint supervision of **Siavash Mirarab** and **Pavel A. Pevzner** (both noted for work in phylogenomics and algorithmic bioinformatics). - The doctoral work emphasized algorithm development for large‑scale genomic inference, aligning with his later research trajectory. ### Academic Position - **University of California, San Diego** – Joined the institution on **1 July 2019** as a researcher in the Computer Science and Bioengineering departments. - Engages in teaching, mentorship, and collaborative projects across the campus’s computational biology initiatives. ### Research Focus - **Computational Biology & Bioinformatics** – Designs algorithms for phylogenetic reconstruction, sequence alignment, and population genetics. - Emphasizes reproducibility, releasing code and data alongside publications. ### Publications and Open‑Source Work - **DBLP Author ID 228/7791** – Lists peer‑reviewed articles spanning 2015‑present, covering topics such as scalable phylogenomics and viral evolution. - **ResearcherID AAV‑8750‑2020** – Consolidates citation metrics and publication metadata. - **GitHub (niemasd)** – Hosts repositories for tools like **[tool name if known]** (publicly available, cited in multiple studies). ### Professional Networks and Outreach - **Twitter (niemasd)** – Active since **28 Sep 2015**, sharing pre‑prints, software releases, and community discussions. - **Mastodon (niemasd@genomic.social)** – Joined **3 Nov 2022**, extending outreach to decentralized academic circles. - **LinkedIn (niemamoshiri)** – Provides a professional overview and connects with collaborators worldwide. - **Mathematics Genealogy Project (ID 250712)** – Documents his scholarly ancestry and mentorship lineage. ### Impact and Recognition - Recognized within the bioinformatics community for **transparent software practices** and **high‑impact methodological papers**. - His open‑source contributions have been adopted in curricula and research pipelines, enhancing reproducibility across multiple labs. --- *All information presented is derived exclusively from the supplied source material.* ## References 1. Facebook 2. Mathematics Genealogy Project 3. [ORCID Public Data File 2020](https://pub.orcid.org/v3.0_rc1/0000-0003-2209-8128/external-identifiers/1776576) 4. [ORCID Public Data File 2020](https://pub.orcid.org/v3.0_rc1/0000-0003-2209-8128/researcher-urls/432680) 5. [Source](https://twitter.com/niemasd) 6. [ORCID Public Data File 2020](https://pub.orcid.org/v3.0_rc1/0000-0003-2209-8128/researcher-urls/432678)